Bio-Perl Trainings

Course: Perl & BioPerl

Duration: 1 Month

 About Course:

The fields of bioinformatics and computational biology involve the development and application of tools such as bioperl to make biological discoveries. some people enter the field as a biologist who learns how to use the tools or as computer scientists/engineers who are able to build tools. A solid background in both biology and Bioperl is extremely helpful.

Eligibility:
  • Graduate or PGs from a recognized University in Life Science with Computer science, Mathematics, Statistics.
  • BE ,M.E in Bioinformatics ,Biotech / BCA / BSc IT ,M.Sc IT / BSc CS, M.Sc CS
  • Post graduate and doctoral students, researchers & corporate working people related to life sciences.
 Career
  • Bioinformatics usersaccess data resources to perform job duties in specific application domains. Bench-based researchers, both in academia and in industry, provide the classic example of a bioinformatics user, but this group is broadening in scope. For example, medical professionals (e.g., physicians and genetic counselors) utilize bioinformatics resources in medical contexts for the purposes of diagnosis, treatment, and counseling of patients.
  • Bioinformatics scientistsare biologists who employ computational methods in order to advance the scientific understanding of living systems
  • Bioinformatics engineerscreate the novel computational methods needed by bioinformatics users and scientists. Thus, a bioinformatics engineer must have strengths in computational and statistical sciences and must have general competency in biomedical sciences.
  • Individual contributor- Many scientific labs, both in the academic and commercial sector, are hiring people trained in Bioperl to support the research of the lab. Positions are available for various levels and types of training. People in these positions generally work on a specific area of research.
  • Core facilities- Many institutions create a central resource for labs in an institution. These resources are call core facilities. Members of such groups often have a mix of skills and work on many different research projects with researchers in many different labs.

  • Educators- There is a demand for teaching bioinformatics at many different levels. Some Ph.D. level bioinformaticians will pursue an academic career, build their own research agenda and teach at the university level. In addition, there are a number of institutions who host a dedicated facility to teach bioinformatics to people inside the institution.Bioperl developers - Another career path that supports bioinformatics is the development of new algorithms and new tools. There are companies dedicated to building and deploying computational tools. Other bioinformatics software developers are hired within core facilities and within individual research labs.

Industries for this skilled Professional
Bio IT company, Biotechnology, Pharmaceutical , Hospitals , Academic and Research institutions

 Syllabus:

Programming in PERL
  • Introduction
  • Basic Operators and Control Structures
  • Scalars, Lists, Hashes, File Manipulation.
  • Pattern Matching and Regular Expressions
  • Subroutines, Text and String Processing
BioPERL Programming

  • General Bioperl classes.
  • Sequences (Bio::Seq Class, Sequence Manipulation)
  • Features and Location Classes (Extracting CDS)
  • Alignments (AlignIO),
  • Analysis (Blast, Genscan),
  • Databases (Database Classes, Accessing a local Database)
  • Conformations in Context
Exercise Program in Bio Perl in Project Work.
1.Program to store a DNA sequence
2. Program to concatenate DNA fragments
3. Program to convert DNA to RNA
4. Program to calculate reverse compliment of DNA sequence
5. Program to read protein sequence data from a file

BioPerl Academic Project Work (Optional):
  • BioPerl for  Sequence Alignment
  • BioPerl for Sequence Search
  • BioPerl for Annotation
  • BioPerl for Sequence match
  • BioPerl for motifs in sequence
Duration: 3 -6 Months
Fees : As per Project selection  & Duration.

Venue :
As per availability of Project Guide /

Biocuration Group

Bangalore | Karnataka | India
Contact No :  8553794025| info@biocurationssl.com


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